Node 61
Ancestral DNA sequence:
Probabilities of bases and MPB (most probable base) at each site.
Site	A	C	G	T	MPB	Probability
1	1	0	0	0	A	1
2	0	0	0	1	T	1
3	0	0	1	0	G	1
4	1	0	0	0	A	1
5	0	0	1	0	G	1
6	0.96	0.01	0.03	0	A	0.96
7	0.99	0	0.01	0	A	0.99
8	0	0	0	1	T	1
9	0	0.24	0	0.76	T	0.76
10	0.01	0.99	0	0	C	0.99
11	0	0	0	1	T	1
12	0	0.99	0	0.01	C	0.99
13	0	0	1	0	G	1
14	1	0	0	0	A	1
15	0	0.08	0.01	0.92	T	0.92
16	1	0	0	0	A	1
17	0.99	0	0.01	0	A	0.99
18	0	1	0	0	C	1
19	0	0.87	0	0.13	C	0.87
20	0	0	0	1	T	1
21	0.33	0	0.66	0.01	G	0.66
22	0	0	1	0	G	1
23	1	0	0	0	A	1
24	0.62	0	0.38	0	A	0.62
25	0	1	0	0	C	1
26	1	0	0	0	A	1
27	0	0	1	0	G	1
28	0	0	0	1	T	1
29	0	0	0	1	T	1
30	0	0.85	0	0.15	C	0.85
31	0	1	0	0	C	1
32	0.35	0	0.65	0	G	0.65
33	0.17	0.21	0.61	0.01	G	0.61
34	0.01	0.84	0.12	0.03	C	0.84
35	0.98	0.01	0.02	0	A	0.98
36	0.16	0.01	0.82	0	G	0.82
37	0.01	0.91	0.06	0.01	C	0.91
38	0.01	0	0.01	0.98	T	0.98
39	0	0.1	0	0.9	T	0.9
40	0	0	0	1	T	1
41	1	0	0	0	A	1
42	0	0.76	0	0.24	C	0.76
43	0	1	0	0	C	1
44	0.02	0.92	0.06	0	C	0.92
45	0	0.51	0	0.49	C	0.51
46	0.21	0.01	0.01	0.77	T	0.77
47	0	1	0	0	C	1
48	0.01	0.88	0.01	0.1	C	0.88
49	0	0	1	0	G	1
50	0	0	1	0	G	1
51	0.4	0.09	0.21	0.29	A	0.4
52	0	1	0	0	C	1
53	0	0	1	0	G	1
54	0.03	0.82	0.12	0.04	C	0.82
55	1	0	0	0	A	1
56	1	0	0	0	A	1
57	0.98	0	0.02	0	A	0.98
58	0	0	0	1	T	1
59	0	0	1	0	G	1
60	0	0	1	0	G	1
61	0	1	0	0	C	1
62	1	0	0	0	A	1
63	0	0	1	0	G	1
64	0	1	0	0	C	1
65	0	0	1	0	G	1
66	0	1	0	0	C	1
67	0	0	0	1	T	1
68	0	0	1	0	G	1
69	0	0.99	0	0.01	C	0.99
70	0.15	0	0.84	0	G	0.84
71	0	0	0	1	T	1
72	0.07	0.04	0.08	0.8	T	0.8
73	0	0	1	0	G	1
74	1	0	0	0	A	1
75	1	0	0	0	A	1
76	0	0	1	0	G	1
77	0	1	0	0	C	1
78	0.04	0.17	0.76	0.03	G	0.76
79	1	0	0	0	A	1
80	0	0	0	1	T	1
81	0	0.01	0	0.99	T	0.99
82	0.86	0	0.14	0	A	0.86
83	1	0	0	0	A	1
84	0.55	0.15	0.21	0.09	A	0.55
85	1	0	0	0	A	1
86	1	0	0	0	A	1
87	0	0.85	0	0.15	C	0.85
88	1	0	0	0	A	1
89	0	0	0	1	T	1
90	0	1	0	0	C	1
91	0	0	1	0	G	1
92	1	0	0	0	A	1
93	0	0.95	0	0.05	C	0.95
94	1	0	0	0	A	1
95	1	0	0	0	A	1
96	0	0.97	0	0.03	C	0.97
97	1	0	0	0	A	1
98	0	0	0	1	T	1
99	0	0.91	0	0.09	C	0.91
100	0	0.99	0	0.01	C	0.99
101	0.99	0	0.01	0	A	0.99
102	0.01	0	0.99	0	G	0.99
103	0	1	0	0	C	1
104	0	1	0	0	C	1
105	0	0.94	0.01	0.04	C	0.94
106	0	0	1	0	G	1
107	0	0	1	0	G	1
108	0	1	0	0	C	1
109	0	0	1	0	G	1
110	0	0	0	1	T	1
111	0.08	0.01	0.9	0.01	G	0.9
112	0	0	1	0	G	1
113	0	1	0	0	C	1
114	0.01	0.18	0.79	0.02	G	0.79
115	0	1	0	0	C	1
116	1	0	0	0	A	1
117	0	0.08	0	0.92	T	0.92
118	0	0	0	1	T	1
119	0	1	0	0	C	1
120	0.02	0.74	0.2	0.04	C	0.74
121	1	0	0	0	A	1
122	0	0	0	1	T	1
123	0	0.52	0	0.48	C	0.52
124	0	0	1	0	G	1
125	0	0	1	0	G	1
126	0	0.26	0	0.74	T	0.74
127	0	0	1	0	G	1
128	1	0	0	0	A	1
129	0	0	0	1	T	1
130	0	0	0	1	T	1
131	0	1	0	0	C	1
132	0.3	0.01	0.68	0.01	G	0.68
133	0	1	0	0	C	1
134	0	0	0	1	T	1
135	0	0	1	0	G	1
136	0.01	0	0.99	0	G	0.99
137	0	1	0	0	C	1
138	0	0.84	0	0.15	C	0.84
139	0	0	0	1	T	1
140	1	0	0	0	A	1
141	0	0.04	0	0.96	T	0.96
142	0	1	0	0	C	1
143	0	0	1	0	G	1
144	0	0.84	0	0.16	C	0.84
145	0	0	1	0	G	1
146	0	0	0	1	T	1
147	0.01	0	0.98	0	G	0.98
148	0.88	0	0.12	0	A	0.88
149	0.05	0.94	0	0.01	C	0.94
150	0.1	0.82	0.05	0.04	C	0.82
151	1	0	0	0	A	1
152	0	0.99	0	0	C	0.99
153	0.08	0.37	0.38	0.16	G	0.38
154	0	0	1	0	G	1
155	1	0	0	0	A	1
156	0	0.87	0.01	0.11	C	0.87
157	0.91	0	0.08	0.01	A	0.91
158	0.01	0.97	0.01	0.01	C	0.97
159	0	0.97	0	0.03	C	0.97
160	0.99	0	0.01	0	A	0.99
161	0	0.99	0	0	C	0.99
162	0.01	0.91	0.05	0.03	C	0.91
163	0	0	0	0	-	0
164	0	0	0	0	-	0
165	0	0	0	0	-	0
166	0.99	0	0.01	0	A	0.99
167	0	1	0	0	C	1
168	0	0.94	0	0.06	C	0.94
169	0	0	1	0	G	1
170	1	0	0	0	A	1
171	0	0.82	0	0.17	C	0.82
172	0	0	1	0	G	1
173	0	1	0	0	C	1
174	0.02	0	0.98	0	G	0.98
175	0	1	0	0	C	1
176	0	0	0	1	T	1
177	0	0	1	0	G	1
178	0	0	0	1	T	1
179	0	0	0	1	T	1
180	0	0.57	0	0.43	C	0.57
181	0	0	1	0	G	1
182	0	0.01	0	0.99	T	0.99
183	0	0.99	0	0	C	0.99
184	0	0	1	0	G	1
185	0	0	1	0	G	1
186	0.03	0.58	0.14	0.25	C	0.58
187	0	1	0	0	C	1
188	1	0	0	0	A	1
189	0	0.02	0	0.98	T	0.98
190	0	1	0	0	C	1
191	0	0	1	0	G	1
192	0	0.96	0	0.04	C	0.96
193	0	1	0	0	C	1
194	0	0	1	0	G	1
195	0	0.93	0.01	0.06	C	0.93
196	0	0	0	1	T	1
197	1	0	0	0	A	1
198	0	0.47	0	0.53	T	0.53
199	0	0	0	1	T	1
200	0	0	0	1	T	1
201	0	0.86	0	0.14	C	0.86
202	0	0	1	0	G	1
203	1	0	0	0	A	1
204	0.21	0	0.79	0	G	0.79
205	0	0	1	0	G	1
206	0	0	0	1	T	1
207	0	0	1	0	G	1
208	0	1	0	0	C	1
209	1	0	0	0	A	1
210	0	0	0	1	T	1
211	0	0	0	1	T	1
212	1	0	0	0	A	1
213	0	1	0	0	C	1
214	0	0	0	1	T	1
215	1	0	0	0	A	1
216	0	1	0	0	C	1
217	0	1	0	0	C	1
218	0	0	0	1	T	1
219	0.02	0	0.97	0.01	G	0.97
220	0	1	0	0	C	1
221	1	0	0	0	A	1
222	0.01	0	0.99	0	G	0.99
223	0	0	1	0	G	1
224	0	0	1	0	G	1
225	0.27	0.31	0.39	0.04	G	0.39
226	0.02	0.38	0.44	0.16	G	0.44
227	0.03	0.96	0	0	C	0.96
228	0.01	0	0.99	0	G	0.99
229	0	1	0	0	C	1
230	1	0	0	0	A	1
231	0.92	0	0.08	0	A	0.92
232	1	0	0	0	A	1
233	0.99	0	0.01	0	A	0.99
234	0.99	0	0.01	0	A	0.99
235	1	0	0	0	A	1
236	0	0	0	1	T	1
237	0.01	0.03	0	0.96	T	0.96
238	0	0	1	0	G	1
239	1	0	0	0	A	1
240	0.98	0	0.02	0	A	0.98
241	0	0.01	0.05	0.94	T	0.94
242	0.26	0	0	0.74	T	0.74
243	0.01	0.25	0.02	0.73	T	0.73
244	0	0	1	0	G	1
245	0	1	0	0	C	1
246	0.03	0.6	0.32	0.05	C	0.6
247	0.02	0.06	0.89	0.03	G	0.89
248	0	0.99	0	0.01	C	0.99
249	0.1	0.69	0.13	0.09	C	0.69
250	1	0	0	0	A	1
251	1	0	0	0	A	1
252	1	0	0	0	A	1
253	0.36	0	0.64	0	G	0.64
254	0.64	0	0.35	0	A	0.64
255	0.03	0.63	0.08	0.26	C	0.63
256	0.2	0.59	0.19	0.02	C	0.59
257	0.88	0.09	0.02	0.01	A	0.88
258	0.02	0	0.98	0	G	0.98
259	0	0.94	0	0.06	C	0.94
260	0	0	0	1	T	1
261	0.03	0	0.96	0.01	G	0.96
262	0	1	0	0	C	1
263	0.99	0	0.01	0	A	0.99
264	0.01	0	0.99	0	G	0.99
265	0.19	0	0.81	0	G	0.81
266	0.01	0.37	0	0.62	T	0.62
267	0.14	0.02	0.84	0.01	G	0.84
268	0	0	1	0	G	1
269	0	0	0	1	T	1
270	0.02	0.01	0.96	0.01	G	0.96
271	0	0	1	0	G	1
272	1	0	0	0	A	1
273	0.09	0	0.91	0	G	0.91
274	0	0	0	1	T	1
275	0.01	0	0.99	0	G	0.99
276	0	0.7	0	0.3	C	0.7
277	0	0	0	1	T	1
278	1	0	0	0	A	1
279	0	0.66	0	0.34	C	0.66
280	0	1	0	0	C	1
281	0	0	1	0	G	1
282	0	0.99	0	0.01	C	0.99
283	0	0	1	0	G	1
284	1	0	0	0	A	1
285	0	0.05	0	0.95	T	0.95
286	0	0	1	0	G	1
287	1	0	0	0	A	1
288	1	0	0	0	A	1
289	1	0	0	0	A	1
290	0	1	0	0	C	1
291	0	0.99	0	0.01	C	0.99
292	0	0	1	0	G	1
293	1	0	0	0	A	1
294	0	0.01	0	0.99	T	0.99
295	0	1	0	0	C	1
296	0	0	1	0	G	1
297	0.02	0.74	0.01	0.24	C	0.74
298	0	0	1	0	G	1
299	1	0	0	0	A	1
300	1	0	0	0	A	1
301	0	0	0	1	T	1
302	1	0	0	0	A	1
303	0	0.94	0	0.06	C	0.94
304	0	1	0	0	C	1
305	0	0	0	1	T	1
306	0	0	1	0	G	1
307	1	0	0	0	A	1
308	1	0	0	0	A	1
309	0.9	0	0.1	0	A	0.9
310	0	0	1	0	G	1
311	0	0	1	0	G	1
312	0	0.97	0	0.03	C	0.97
313	0.05	0.04	0.04	0.87	T	0.87
314	0.01	0	0.92	0.07	G	0.92
315	0	0.96	0.01	0.03	C	0.96
316	0	0	0	0	-	0
317	0	0	0	0	-	0
318	0	0	0	0	-	0
319	0	0	1	0	G	1
320	0	0	1	0	G	1
321	0.12	0.05	0.01	0.81	T	0.81
322	0.08	0	0.92	0	G	0.92
323	1	0	0	0	A	1
324	0.63	0.36	0.01	0.01	A	0.63
325	1	0	0	0	A	1
326	0	1	0	0	C	1
327	0	0.99	0	0.01	C	0.99
328	0	0	1	0	G	1
329	0	0	0	1	T	1
330	0.06	0	0.94	0	G	0.94
331	0	0.99	0	0	C	0.99
332	1	0	0	0	A	1
333	0.01	0	0.99	0	G	0.99
334	0	0	1	0	G	1
335	0	0	0	1	T	1
336	0.03	0.02	0.92	0.04	G	0.92
337	0	1	0	0	C	1
338	0.98	0	0.02	0	A	0.98
339	0	0.99	0	0.01	C	0.99
340	0	0	1	0	G	1
341	1	0	0	0	A	1
342	0.98	0	0.02	0	A	0.98
343	0	0	1	0	G	1
344	0	0	1	0	G	1
345	0.22	0.28	0.47	0.03	G	0.47
346	0	1	0	0	C	1
347	1	0	0	0	A	1
348	0.08	0	0.92	0	G	0.92
349	1	0	0	0	A	1
350	0	0	0	1	T	1
351	0.01	0	0.99	0	G	0.99
352	0	0	1	0	G	1
353	0	0	0	1	T	1
354	0.06	0	0.93	0.01	G	0.93
355	1	0	0	0	A	1
356	0	0	0	1	T	1
357	0	0	0	1	T	1
358	0	0	0	1	T	1
359	0	0	1	0	G	1
360	0	0.77	0	0.23	C	0.77
361	0	0	1	0	G	1
362	1	0	0	0	A	1
363	0.01	0.6	0.01	0.38	C	0.6
364	1	0	0	0	A	1
365	1	0	0	0	A	1
366	0	1	0	0	C	1
367	0.05	0.41	0.51	0.03	G	0.51
368	1	0	0	0	A	1
369	0	0.02	0	0.98	T	0.98
370	0	0	1	0	G	1
371	1	0	0	0	A	1
372	0.73	0	0.27	0	A	0.73
373	0	0	1	0	G	1
374	0	1	0	0	C	1
375	0.01	0.82	0.01	0.16	C	0.82
376	0	0	0	1	T	1
377	1	0	0	0	A	1
378	0	0.99	0	0.01	C	0.99
379	0	1	0	0	C	1
380	0	0	1	0	G	1
381	0	0.71	0	0.29	C	0.71
382	0	0	0	1	T	1
383	0	0	0	1	T	1
384	0	0.16	0	0.84	T	0.84
385	1	0	0	0	A	1
386	0	0	0	1	T	1
387	0	1	0	0	C	1
388	0.94	0	0.01	0.05	A	0.94
389	0	0	1	0	G	1
390	0	0.67	0	0.33	C	0.67
391	0	0	1	0	G	1
392	1	0	0	0	A	1
393	0	0.06	0.01	0.93	T	0.93
394	0.25	0	0.75	0	G	0.75
395	0.67	0.33	0	0	A	0.67
396	0	1	0	0	C	1
397	0	0.97	0.03	0	C	0.97
398	0	1	0	0	C	1
399	0.37	0.03	0.57	0.02	G	0.57
400	0	0	1	0	G	1
401	0	0	0	1	T	1
402	0.6	0.02	0.38	0.01	A	0.6
403	0	0	0	0	-	0
404	0	0	0	0	-	0
405	0	0	0	0	-	0
406	0	0	0	0	-	0
407	0	0	0	0	-	0
408	0	0	0	0	-	0
409	1	0	0	0	A	1
410	1	0	0	0	A	1
411	0.99	0	0.01	0	A	0.99
412	1	0	0	0	A	1
413	1	0	0	0	A	1
414	1	0	0	0	A	1
415	0	0	1	0	G	1
416	0	0	0	1	T	1
417	0	0.99	0	0.01	C	0.99
418	0	0	1	0	G	1
419	0	0	0	1	T	1
420	0.93	0	0.06	0.01	A	0.93
421	0	1	0	0	C	1
422	0	0	0	1	T	1
423	0	1	0	0	C	1
424	1	0	0	0	A	1
425	1	0	0	0	A	1
426	0.95	0.03	0	0.02	A	0.95
427	0	0	1	0	G	1
428	0	0	0	1	T	1
429	0.03	0.04	0.92	0.01	G	0.92
430	1	0	0	0	A	1
431	0	1	0	0	C	1
432	0	0.99	0	0.01	C	0.99
433	1	0	0	0	A	1
434	0	0	0	1	T	1
435	0	0.93	0	0.07	C	0.93
436	0	0	1	0	G	1
437	1	0	0	0	A	1
438	1	0	0	0	A	1
439	0	0	1	0	G	1
440	1	0	0	0	A	1
441	0	0.99	0	0.01	C	0.99
442	0	0	1	0	G	1
443	0	0	1	0	G	1
444	0	0	0	1	T	1
445	0	0	0	1	T	1
446	1	0	0	0	A	1
447	0	0.02	0	0.98	T	0.98
448	0	0	0	1	T	1
449	0	0	0	1	T	1
450	0	1	0	0	C	1
451	0	1	0	0	C	1
452	1	0	0	0	A	1
453	0	0.03	0.01	0.97	T	0.97
454	1	0	0	0	A	1
455	1	0	0	0	A	1
456	0	0.99	0	0.01	C	0.99
457	1	0	0	0	A	1
458	1	0	0	0	A	1
459	1	0	0	0	A	1
460	0	0	0	1	T	1
461	1	0	0	0	A	1
462	1	0	0	0	A	1


The most probable ancestral DNA sequence is:
ATGAGAATTCTCGATAACCTGGAACAGTTCCGGCAGCTTTACCCCTCCGGACGCAAATGGCAGCGCTGCGTTGAAGCGATTAAAAACATCGACAACATCCAGCCCGGCGTGGCGCATTCCATCGGTGATTCGCTGGCCTATCGCGTGACCACGGACACCACC---ACCGACGCGCTGTTCGTCGGCCATCGCCGCTATTTCGAGGTGCATTACTACCTGCAGGGGGCGCAAAAAATTGAATTTGCCGCCAAAGACCAGCTGCAGGTGGTGGAGTGCTACCGCGATGAAACCGATCGCGAATACCTGAAAGGCTGC---GGTGAAACCGTGCAGGTGCACGAAGGGCAGATGGTGATTTGCGACAACGATGAAGCCTACCGCTTTATCAGCGATGACCCGGTA------AAAAAAGTCGTACTCAAAGTGACCATCGAAGACGGTTATTTCCATAACAAATAA

The most probable DNA sequence without gaps is:
ATGAGAATTCTCGATAACCTGGAACAGTTCCGGCAGCTTTACCCCTCCGGACGCAAATGGCAGCGCTGCGTTGAAGCGATTAAAAACATCGACAACATCCAGCCCGGCGTGGCGCATTCCATCGGTGATTCGCTGGCCTATCGCGTGACCACGGACACCACCACCGACGCGCTGTTCGTCGGCCATCGCCGCTATTTCGAGGTGCATTACTACCTGCAGGGGGCGCAAAAAATTGAATTTGCCGCCAAAGACCAGCTGCAGGTGGTGGAGTGCTACCGCGATGAAACCGATCGCGAATACCTGAAAGGCTGCGGTGAAACCGTGCAGGTGCACGAAGGGCAGATGGTGATTTGCGACAACGATGAAGCCTACCGCTTTATCAGCGATGACCCGGTAAAAAAAGTCGTACTCAAAGTGACCATCGAAGACGGTTATTTCCATAACAAATAA

The accuracy score for that sequence is 0.94528888888889

The accuracy score is defined as the average probability of
the most probable bases.  It is NOT the probability that the
most probable sequence is correct.  That probability is 9.08124471930686e-14.
The natural log of that probability is -30.0299800350744.

Ancestral Protein Sequence:
Column headings:
MPAA = most probable amino acid, pMPAA = probability of MPAA
MPAA2 = second most probable amino acid, pMPAA2 = probability of MPAA2
Ratio = pMPAA/pMPAA2,  Unreliable means Ratio <1.5

MPAA	pMPAA	MPAA2	pMPAA2	Ratio
M	1	A	0	9999	
R	0.99	S	0.01	99	
I	0.99	V	0.01	99	
L	0.99	I	0.01	99	
D	1	E	0.01	100	
N	0.99	S	0.01	99	
L	0.9987	F	0.0013	768.230769230769	
E	1	A	0	9999	
Q	1	A	0	9999	
F	1	A	0	9999	
R	0.65	Q	0.273	2.38095238095238	
Q	0.806736	E	0.115248	7	
L	0.8918	V	0.0588	15.1666666666667	
Y	1	A	0	9999	
P	0.92	R	0.06	15.3333333333333	
S	0.77	T	0.21	3.66666666666667	
G	0.99	A	0	9999	
R	1.01	A	0	9999	
K	1	A	0	9999	
W	1	A	0	9999	
Q	1	A	0	9999	
R	1	A	0	9999	
C	1	A	0	9999	
V	0.8316	I	0.1365	6.09230769230769	
E	1	A	0	9999	
A	1	R	0	9999	
I	1	A	0	9999	
K	0.6536	N	0.2064	3.16666666666667	
N	1	A	0	9999	
I	1	A	0	9999	
D	1	A	0	9999	
N	1	A	0	9999	
I	1	A	0	9999	
Q	0.9801	X	0.009901	98.990001009999	
P	0.99	A	0	9999	
G	1	A	0	9999	
V	1	A	0	9999	
A	1	R	0	9999	
H	1	A	0	9999	
S	1	A	0	9999	
I	1	A	0	9999	
G	1	A	0	9999	
D	1	A	0	9999	
S	1	A	0	9999	
L	1	A	0	9999	
A	0.9801	T	0.0099	99	
Y	1	A	0	9999	
R	1	A	0	9999	
V	0.99	A	0	9999	
T	0.835472	A	0.113928	7.33333333333333	
T	0.9801	A	0	9999	
D	0.98	E	0.01	98	
T	0.8827	A	0.0776	11.375	
T	0.9801	A	0.0099	99	
	0	-	0	0
T	0.99	A	0.01	99	
D	0.99	A	0	9999	
A	1	R	0	9999	
L	1	A	0	9999	
F	1	A	0	9999	
V	0.9801	A	0.0099	99	
G	1	A	0	9999	
H	1	A	0	9999	
R	1	A	0	9999	
R	1	A	0	9999	
Y	1	A	0	9999	
F	1	A	0	9999	
E	1	A	0	9999	
V	1	A	0	9999	
H	1	A	0	9999	
Y	1	A	0	9999	
Y	1	A	0	9999	
L	1	A	0	9999	
Q	1	A	0	9999	
G	1.01	A	0	9999	
A	0.4224	P	0.3648	1.15789473684211	Unreliable
Q	1	A	0	9999	
K	0.99	R	0.01	99	
I	1	A	0	9999	
E	1	A	0	9999	
F	0.681688	Y	0.239512	2.84615384615385	
A	1	R	0	9999	
A	0.889911	P	0.059994	14.8333333333333	
K	1	A	0	9999	
D	0.364544	G	0.224	1.62742857142857	
Q	0.5192	K	0.176	2.95	
L	0.9994	F	0.0006	1665.66666666667	
Q	0.99	R	0.01	99	
V	0.507222	A	0.302697	1.67567567567568	
V	1	A	0	9999	
E	1	A	0	9999	
C	0.99	Y	0.01	99	
Y	1	A	0	9999	
R	1	A	0	9999	
D	1	A	0	9999	
E	1	A	0	9999	
T	1	A	0	9999	
D	1	A	0	9999	
R	1.01	A	0	9999	
E	1	A	0	9999	
Y	1	A	0	9999	
L	1	A	0	9999	
K	1	A	0	9999	
G	1	A	0	9999	
C	0.792396	F	0.060291	13.1428571428571	
	0	-	0	0
G	0.99	A	0	9999	
E	0.5888	D	0.3404	1.72972972972973	
T	1	A	0	9999	
V	1	A	0	9999	
Q	0.99	A	0	9999	
V	1.01	A	0	9999	
H	0.98	R	0.02	49	
E	1	A	0	9999	
G	1	A	0	9999	
Q	1	A	0	9999	
M	0.99	I	0.01	99	
V	1	A	0	9999	
I	1	A	0	9999	
C	1	A	0	9999	
D	0.98	E	0.02	49	
N	1	A	0	9999	
D	0.51	H	0.41	1.24390243902439	Unreliable
E	1	A	0	9999	
A	1	R	0	9999	
Y	1	A	0	9999	
R	1	A	0	9999	
F	1	A	0	9999	
I	1	A	0	9999	
S	0.94	C	0.05	18.8	
D	0.99	E	0.01	99	
D	0.5025	A	0.2475	2.03030303030303	
P	0.9603	A	0.0297	32.3333333333333	
V	1.01	A	0	9999	
	0	-	0	0
	0	-	0	0
K	1	A	0	9999	
K	1	A	0	9999	
V	1	A	0	9999	
V	1	A	0	9999	
L	1	A	0	9999	
K	0.95	N	0.05	19	
V	1	A	0	9999	
T	1	A	0	9999	
I	1	A	0	9999	
E	1	A	0	9999	
D	1	A	0	9999	
G	1	A	0	9999	
Y	1	A	0	9999	
F	1	A	0	9999	
H	1	Q	0.01	100	
N	1	A	0	9999	
K	1	A	0	9999	
X	1	A	0	9999	


The most probable ancestral protein sequence is:
MRILDNLEQFRQLYPSGRKWQRCVEAIKNIDNIQPGVAHSIGDSLAYRVTTDTT-TDALFVGHRRYFEVHYYLQGAQKIEFAAKDQLQVVECYRDETDREYLKGC-GETVQVHEGQMVICDNDEAYRFISDDPV--KKVVLKVTIEDGYFHNKX

The most probable ancestral protein sequence without gaps is:
MRILDNLEQFRQLYPSGRKWQRCVEAIKNIDNIQPGVAHSIGDSLAYRVTTDTTTDALFVGHRRYFEVHYYLQGAQKIEFAAKDQLQVVECYRDETDREYLKGCGETVQVHEGQMVICDNDEAYRFISDDPVKKVVLKVTIEDGYFHNKX

The accuracy score for that sequence is 0.957329793333333

The accuracy score is defined as the average probability of
the most probable amino acids.  It is NOT the probability that the
most probable sequence is correct.  That probability is 0.000254653984240371
The natural log of that probability is -8.27560485880919.

